By constructing a skeleton model of MCM?41 loaded with various functional groups, the adsorption and diffusion properties of water molecules in McM?41 pores with different hydrophilic and hydrophobic properties were calculated by GCMC and MD simulations. The results show that the water adsorption isotherms of MCM?41 materials are mainly Ⅱ type. Hydrophilic functional groups loaded on MCM?41 pore surface can form hydrogen bonds with water molecules, so the interaction force on water molecules is about 114.27% higher than that of hydrophobic functional groups. The diffusion capacity of water molecules in the hole of MCM?41 is positively correlated with the hydrophilicity of surface functional groups, and the diffusion coefficient of water molecules in the material with hydrophilic surface is about 58.82% higher than that of the hydrophobic surface. It was proved that MCM?41 material with hydrophilic surface can promote the adsorption and diffusion behavior of water molecules in pores in aqueous environment.